1/22/2020: Intro to bash/jupyter/genomics
Lecture: (HTML) (PDF)
Notebooks: Link to assignment
Answers:
(nb-1.1)
Reading:
- Shendure et al. 2017
1/27/2020: Intro to Python and genome annotation
Lecture: (HTML) (PDF)
Notebooks: Link to assignment
Answers:
(nb-2.0)
(nb-2.1)
(nb-2.2)
Reading:
- Chapters 1, 3, and 4 of the official Python tutorial
1/29/2020: Advanced Python
Lecture: (HTML) (PDF)
Notebooks: Link to assignment
Answers:
(nb-3.0)
(nb-3.1)
(nb-3.2)
Reading:
- Chapters 5, 7, and 8 of the official Python tutorial
- Yandell et al. 2012, Genome Annotation
2/3/2020: Scientific Python
Lecture:
(HTML) (PDF)
Notebooks:
Link to assignment
Answers:
(nb-4.1)
(nb-4.2)
Reading:
- Chapters 2,3 Python Data Science Handbook
- Waterhouse et al. 2012
2/5/2020: Homology and Blast
Lecture:
(HTML) (PDF)
Notebooks:
Link to assignment
Answers:
(nb-5.1)
(nb-5.2)
Reading:
- Chapter 4 (plotting) of the Python Data Science Handbook