Installation

toytree can be installed using pip or conda (or mamba), any of which will pull in all required dependencies. We also provide instructions below for installing from source (GitHub).

Conda install (recommended)

$ conda install toytree -c conda-forge

Pip install

$ pip install toytree

Dependencies

Our goal is to maintain toytree as a minimalist library that does not require substantial dependencies outside of the standard Python scientific stack (i.e., numpy, scipy, and pandas).

- python>=3.7
- numpy
- scipy
- pandas
- loguru
- requests
- toyplot
- ghostscript  # to save PNGs

Installing Development Versions

$ git clone https://github.com/eaton-lab/toytree.git
$ cd toytree
$ conda install toytree -c conda-forge --only-deps
$ pip install -e . --no-deps

Building the documentation

$ conda install mkdocs-material mkdocstrings-python mkdocs-jupyter -c conda-forge