Replicated Patterns of Population Genetic Structure Mirror
Community Structure Across the Hengduan Mountains
Biodiversity Hotspot

Deren A. R. Eaton
Dept. of Ecology, Evolution, and Environmental Biology
Columbia University

Co-authors: Jared Meek, Isaac Overcast, Patrick McKenzie,
Jianjun Jin, Yue Yang, and Richard Ree

Community structure arises from the intersection of ecology and
Biogeography: The spatial distribution of species

Population structure arises from the intersection of ecology and
Phylogeography: The spatial distribution of alleles

Temporal hypothesis 1: Biogeographic patterns arise from
replicated phylogeographic patterns

Temporal hypothesis 2: Phylogeographic patterns are shaped
by existing biogeographic patterns

Plant Biodiversity, Genomics, and Reproductive Evolution

The Hengduan Mountains

The Hengduan Mountains

The Hengduan Mountains

Features/Topography of the Hengduan Mountains

Features/Topography of the Hengduan Mountains

Which barriers are most significant?

The genus in Pedicularis

Pedicularis L. (Orobanchaceae)

  • >600 species globally, >300 endemic to Hengduan Mountains
  • Extravagant floral diversity and convergence (shape and color) (Ree 2005, Yang et al. In Prep)
  • Species rich assemblages of co-flowering spp;
    (Eaton & Ree 2012; Tong & Huang 2016)
  • Extensive herbaria collections (KIB, HUH, FMNH)
  • High potential for reproductive conflict

Species interactions / Character displacement / Speciation

Reproductive Interference: Negative fitness consequences of reproduction being disrupted by another organism. E.g., pollinator attraction and pollen placement.

Competitive exclusion evidenced by floral phenotypic overdispersion in assemblages (Eaton & Ree 2012).

Partitioning of shared pollinators

Mechanical isolation

The beak of the galea directs pollen placement and pickup.

Isolation enables local adaptation

Differences among populations (within-species) may result from interspecific interactions driving character displacement in local communities.

How are patterns of within-species gene flow
shaped by geographic barriers?

How are patterns of across-species dispersal and community assembly
shaped by geographic barriers?

Comparative Phylogeography of Widespread spp.

Population genomics of 12 widespread taxa

WGS (1 species); ddRAD/3RAD (11 species); 1,256 samples.

Populations are highly structured

Expansion from the north; structured by river basins

Populations are highly structured

Expansion from the south; structured by river basins

Populations are highly structured

Expansion from the south; structured by river basins

Effective migration surface: Prhi

Effective migration surface: Plon

Effective migration surface: Pcra

How do migration surfaces compare among species?

How do migration surfaces compare among species?

Effective migration surfaces across 12 species

Stacked migration statistics across 12 species

Stacked migration statistics across 12 species

Replicated phylogeography conclusions

  • Most spp migration surfaces are not concordant, but...
  • Tibetan Plateau: high migration, uniform among spp.
  • Southern HMR: low migration, variable among spp.
  • Three Rivers: high/med migration, uniform within and across.
  • Isolation by distance within mountain ranges

Pedicularis community migration/turnover

Data: 13,566 occurrence records of Pedicularis from GBIF + HUH + our collections.
HDBSCAN: cluster occurrences by distance & elevation = 211 assemblages

Assemblage motif membership (K=7) (ecostructure)

Pedicularis community structure (across 320 species) clusters by region similarly to genetic population structure in the 12 widespread species.

Effective Assemblage Migration in fEEMs

Using site-by-species matrix in place of site-by-allele matrix. High migration = low spp turnover across space; low migration = high spp turnover across space.

Population Genetic ~ Assemblage Migration

Patterns are highly concordant (orange=both high or both low). Regions acting as barriers to species co-occurrence also act as barriers to gene flow, and vice-versa.

Population Genetic ~ Assemblage Migration

Migration is lower across large elevation changes

For paths of length=5 on graph: sum migration x sum change in elevation.

Conclusions (and what's next)

  • Across 12 widespread species we found strong population structure.
  • But, spp often diverged over shared barriers in different orders.
  • And so most species exhibit different effective migration surfaces.
  • But when stacked, some consistent patterns emerge.

  • Across >200 assemblages we found strong community structure.
  • Community migration patterns mirror within-species genetic migration patterns.

Temporal hypothesis 1: Biogeographic patterns arise from
replicated phylogeographic patterns

Temporal hypothesis 2: Phylogeographic patterns are shaped
by existing biogeographic patterns